ARC Complex Open Systems Research Network

Dr Matthew Berryman

 

University of South Australia Address: DASI, Mawson Lakes Campus University of South Australia GPO Box 2471 Adelaide SA 5001 Phone: +61-8-8302-5882 Fax: +61-8-8302-5344 Email: matthew.berryman@unisa.edu.au Webpage: http://www.berrymanconsulting.com/ Research Node: South Australia

 

Role in Network

Academic - Researcher

COSNet Research Themes

1. Irreversibility and Emergence in Nonequilibrium Systems
2. Turbulence and Coherent Structures, Control and Computation
3. Dynamics and Statistics of Multi-Scale Systems
4. Network Theory
5. Cellular Automata, Agent-Based Modelling and Simulation

COSNet Application Areas

1. Complex Physical Systems
2. Complex Biological Systems
3. Complex Computational Systems
4. Complex Socio-Economic Systems

 

Research Topics

Structure in complex systems, causality and inference, emergence, agent based modelling, machine learning  

Publications

Matthew J. Berryman, Neil F. Johnson and Derek Abbott, “Contagions across networks: colds and markets”,Proc. SPIE: Complex Systems 6039 ed. Axel Bender, Brisbane, Qld., Australia, December 11-14, 2005.

Matthew J. Berryman, Scott W. Coussens, Yvonne Pamula, Declan Kennedy, Kurt Lushington, Cosma Shalizi, Andrew Allison, A. James Martin, David Saint and Derek Abbott, “Nonlinear aspects of the EEG during sleep in children”, Proc. SPIE: Fluctuations and Noise in Biological, Biophysical, and Biomedical Systems 5841, Austin, Texas, USA, May 24-26, 2005.

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Gene network analysis and design”, Proc. SPIE: Biomedical Applications of Micro- and Nanoengineering 5651, Sydney, Australia, Dec. 12-15, 2004.

Sabrina L. Spencer, Matthew J. Berryman, José A. García and Derek Abbott, “An ordinary differential equation model for the multistep transformation to cancer”, Journal of Theoretical Biology 231(4), pp. 515-524, 2004.

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Optimizing genetic algorithm strategies for evolving networks”, Proc. SPIE: Noise in Communication 5473, Maspalomas, Spain, May 25-28, 2004.

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Cellular automata for exploring gene regulation in Drosophila ”, Proc. SPIE: BioMEMS and Nanotechnology 5275, ed. Dan V. Nicolau, Perth, Australia, Dec. 9-12, 2003.

Kim L. Lim, Isaac Mann, Ricardo Santos, Brad Tobin, Matthew J. Berryman, Alex Ryan and Derek Abbott, “Adaptive battle agents: complex adaptive combat models”,Proc. SPIE: Complex Systems 6039 ed. Axel Bender, Brisbane, Qld., Australia, December 11-14, 2005.

Melissa Ryan, Matthew J. Berryman and Derek Abbott, “Modeling the effect of p53 on tumor heterogeneity and the mutator phenotype”, Proc. SPIE: Biomedical Applications of Micro- and Nanoengineering 5651, Sydney, Australia, Dec. 12-15, 2004.

G. Korniss, M.B. Hastings, K.E. Bassler, M.J. Berryman, B. Kozma and D. Abbott, “Scaling in small-world resistor networks”, Physics Letters A 350(5-6), pp. 324-330, 2006.

M.J. Berryman, “A Complex Systems Approach to Important Biological Problems”, 2007.  

End-User Applications

defence, biological modelling and analysis  

Professional or Public Outreach Activities

Visited the University of Michigan Center for the Study of Complex Systems in 2004 and 2005.

Attended the Santa Fe Institute Complex Systems Summer School in 2003.

 

Complex Systems Software

Repast (Java), Netlogo, Python  

Awards and Distinctions

Seimens Prize for Innovation for 2002 Honours project.
Santa Fe Institute Summer School Scholarship in 2003.